Tony Capra (aka John Capra)
CV, Google Scholar
Tony Capra is an Assistant Professor of Biological Sciences at Vanderbilt University. His group uses the tools of computer science and statistics to address problems in genetics, evolution, and biomedicine. He received his PhD in computer science from Princeton University and completed a postdoc in the Gladstone Institutes at UCSF.
David Rinker, January 2016 – Present
David received his PhD in Genetics from Vanderbilt in 2015. His interests center around functional genomics, with a particular interest in exploring the relationship between gene regulation and phenotype. David’s previous research spanned both arthropod and fungal genomics, and he remains interested in placing genomic inquiries within the larger framework of comparative evolutionary biology.
Greg Sliwoski, July 2016 – Present
Greg received his PhD in Biochemistry from the University of Leipzig in Germany. He is primarily interested in exploring computational techniques that incorporate protein structure prediction into variant effect prediction. His research goals include improving rare variant analysis with structural modeling and applying these methods to personalized medicine and drug discovery. His previous research topics include computer-aided drug discovery, GPCR structure prediction and ligand docking, and QSAR descriptor development. Other interests include neuroscience and music.
Mary Lauren Benton (DBMI), Summer 2016 – Present
Mary Lauren is a graduate student in the BIDS program in the Department of Biomedical Informatics. She graduated with a B.S. in Bioinformatics from Baylor University.
Ling Chen (Biological Sciences), Summer 2014 – Present
Ling is a graduate student in the Biological Sciences program. She graduated with a B.S. in Biology from Nankai University. She is interested in exploring regulatory regions in the genome and epigenetic dynamics.
Souhrid Mukherjee (Biological Sciences), Summer 2017 – Present
Souhrid is a graduate student in the Biological Science program. He is interested in personalized structural biology, systems biology and the role of protein-protein interactions in human diseases. He holds a B.S and M.S in Biochemistry, from the University of Calcutta, India.
Mike Sivley (Biomedical Informatics), Summer 2013 – Present
Mike holds a BS and MS in Computer Science. His masters thesis focused on clustering rare genetic variation to improve statistical power for association studies. His current research explores protein structural mapping and analysis of genetic variation, with an emphasis on ocular genomics. His general research interests include machine learning, genetics, and bioinformatics.
Xiaoyi Dou, Undergrad Intern, Summer 2016 –
- Xiaoyi is a computer science major at Vanderbilt University. He is working on methods for integrating genetic data into protein structures.
Chantay Young, Undergrad Intern, Summer 2017 –
- Chantay is majoring in biological sciences and medicine, health, and society at Vanderbilt University. As part of tye SyBBURE program she is developing machine learning methods to identify gene regulatory regions.
Alexandra Fish (Human Genetics), Summer 2012 – Spring 2017
Alex’s research focused on identifying genetic variants that regulate gene expression levels, with an emphasis on both long-range regulation and interactions between variants. She graduated with a B.S. in Biology and a B.S. in Psychology from UNC-Chapel Hill.
Corinne Simonti (Human Genetics), Summer 2013 – Spring 2017
Corinne Simonti was a graduate student in the Human Genetics program at Vanderbilt University. Her primary interests focused on determining the genetic basis of the phenotypic differences between humans and archaic hominins. She graduated with a B.S. in Genetics from the University of Georgia in 2012.
Joanna Zhang, Undergrad Intern, Summer 2015 – Spring 2017
- Joanna was a math major at Vanderbilt University. She mapped placental gene regulatory enhancers and tested them for accelerated evolution.
Shahrukh Malik (COMSATS Institute of Information Technology), Undergrad Intern, Summer 2016
Zubia Shahid (University of the Sciences), Intern, Summer 2015
Laura Colbran (Carleton College), Undergrad Intern, Summer 2014. Laura is now a graduate student at Vanderbilt.
Vir Patel (Western Kentucky University), Undergrad Intern, Summer 2014. Vir is now an undergrad at Duke.